IL_6S0K_068

3D structure

PDB id

6S0K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome nascent chain in complex with SecA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

6S0K|1|A|A|1801, 6S0K|1|A|C|1816, 6S0K|1|A|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S0K_068 not in the Motif Atlas

Homologous match to IL_7A0S_065

Geometric discrepancy: 0.086

The information below is about IL_7A0S_065

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

6S0K|1|A|U|1798
6S0K|1|A|G|1799
6S0K|1|A|C|1800
6S0K|1|A|A|1801
6S0K|1|A|A|1802
6S0K|1|A|A|1803
6S0K|1|A|C|1804
*
6S0K|1|A|G|1813
6S0K|1|A|G|1814
6S0K|1|A|A|1815
6S0K|1|A|C|1816
6S0K|1|A|G|1817
6S0K|1|A|U|1818
6S0K|1|A|A|1819
6S0K|1|A|U|1820
6S0K|1|A|A|1821

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2