IL_6S0K_082

3D structure

PDB id

6S0K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome nascent chain in complex with SecA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAGG*CCGACCUUGAAAUAC

Length

20 nucleotides

Bulged bases

6S0K|1|A|U|2172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S0K_082 not in the Motif Atlas

Homologous match to IL_5J7L_329

Geometric discrepancy: 0.2235

The information below is about IL_5J7L_329

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_87290.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L

Number of instances in this motif group

1

Unit IDs

6S0K|1|A|G|2124
6S0K|1|A|G|2125
6S0K|1|A|A|2126
6S0K|1|A|G|2127
6S0K|1|A|G|2128
*
6S0K|1|A|C|2160
6S0K|1|A|C|2161
6S0K|1|A|G|2162
6S0K|1|A|A|2163
6S0K|1|A|C|2164
6S0K|1|A|C|2165
6S0K|1|A|U|2166
6S0K|1|A|U|2167
6S0K|1|A|G|2168
6S0K|1|A|A|2169
6S0K|1|A|A|2170
6S0K|1|A|A|2171
6S0K|1|A|U|2172
6S0K|1|A|A|2173
6S0K|1|A|C|2174

Current chains

Chain A

23S ribosomal RNA

Nearby chains