IL_6S0X_024

3D structure

PDB id

6S0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

ACGAG*CGAAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S0X_024 not in the Motif Atlas

Homologous match to IL_5J7L_274

Geometric discrepancy: 0.5105

The information below is about IL_5J7L_274

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6S0X|1|A|A|920
6S0X|1|A|C|921
6S0X|1|A|G|922
6S0X|1|A|A|923
6S0X|1|A|G|924
*
6S0X|1|A|C|943
6S0X|1|A|G|944
6S0X|1|A|A|945
6S0X|1|A|A|946
6S0X|1|A|U|947

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L16