3D structure

PDB id
6S0X (explore in PDB, NAKB, or RNA 3D Hub)
Description
Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.42 Å

Loop

Sequence
GGG*CGC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6S0X_033 not in the Motif Atlas
Homologous match to IL_4WF9_045
Geometric discrepancy: 0.0987
The information below is about IL_4WF9_045
Detailed Annotation
Isolated cWH basepair
Broad Annotation
No text annotation
Motif group
IL_10167.6
Basepair signature
cWW-cHW-cWW
Number of instances in this motif group
51

Unit IDs

6S0X|1|A|G|1243
6S0X|1|A|G|1244
6S0X|1|A|G|1245
*
6S0X|1|A|C|1277
6S0X|1|A|G|1278
6S0X|1|A|C|1279

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain E
50S ribosomal protein L4
Chain J
50S ribosomal protein L15

Coloring options:


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