IL_6S0X_043

3D structure

PDB id

6S0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

CUAAGC*GUGAUGG

Length

13 nucleotides

Bulged bases

6S0X|1|A|G|1569

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S0X_043 not in the Motif Atlas

Homologous match to IL_4WF9_058

Geometric discrepancy: 0.1783

The information below is about IL_4WF9_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_88190.1

Basepair signature

cWW-L-R-tHS-L-R-L-R-cWW

Number of instances in this motif group

1

Unit IDs

6S0X|1|A|C|1511
6S0X|1|A|U|1512
6S0X|1|A|A|1513
6S0X|1|A|A|1514
6S0X|1|A|G|1515
6S0X|1|A|C|1516
*
6S0X|1|A|G|1564
6S0X|1|A|U|1565
6S0X|1|A|G|1566
6S0X|1|A|A|1567
6S0X|1|A|U|1568
6S0X|1|A|G|1569
6S0X|1|A|G|1570

Current chains

Chain A

23S ribosomal RNA

Nearby chains