IL_6S0X_048

3D structure

PDB id

6S0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

UCUCGU*AACGAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S0X_048 not in the Motif Atlas

Geometric match to IL_6O5F_001

Geometric discrepancy: 0.24

The information below is about IL_6O5F_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31007.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

5

Unit IDs

6S0X|1|A|U|1701
6S0X|1|A|C|1702
6S0X|1|A|U|1703
6S0X|1|A|C|1704
6S0X|1|A|G|1705
6S0X|1|A|U|1706
*
6S0X|1|A|A|2024
6S0X|1|A|A|2025
6S0X|1|A|C|2026
6S0X|1|A|G|2027
6S0X|1|A|A|2028
6S0X|1|A|G|2029

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain L

50S ribosomal protein L17