IL_6S0X_055

3D structure

PDB id

6S0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

UGCUAAA*UGAUGUAUA

Length

16 nucleotides

Bulged bases

6S0X|1|A|U|1828, 6S0X|1|A|U|1843, 6S0X|1|A|U|1847

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S0X_055 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.0674

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

6S0X|1|A|U|1825
6S0X|1|A|G|1826
6S0X|1|A|C|1827
6S0X|1|A|U|1828
6S0X|1|A|A|1829
6S0X|1|A|A|1830
6S0X|1|A|A|1831
*
6S0X|1|A|U|1840
6S0X|1|A|G|1841
6S0X|1|A|A|1842
6S0X|1|A|U|1843
6S0X|1|A|G|1844
6S0X|1|A|U|1845
6S0X|1|A|A|1846
6S0X|1|A|U|1847
6S0X|1|A|A|1848

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2