IL_6S0X_134

3D structure

PDB id

6S0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

UUG*CAA

Length

6 nucleotides

Bulged bases

6S0X|1|a|U|1011

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S0X_134 not in the Motif Atlas

Geometric match to IL_4V9F_044

Geometric discrepancy: 0.2696

The information below is about IL_4V9F_044

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.6

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

41

Unit IDs

6S0X|1|a|U|1010
6S0X|1|a|U|1011
6S0X|1|a|G|1012
*
6S0X|1|a|C|1048
6S0X|1|a|A|1049
6S0X|1|a|A|1050

Current chains

Chain a

16S ribosomal RNA

Nearby chains