IL_6S0X_144

3D structure

PDB id

6S0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S0X_144 not in the Motif Atlas

Geometric match to IL_5TBW_026

Geometric discrepancy: 0.2953

The information below is about IL_5TBW_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6S0X|1|a|C|1313
6S0X|1|a|G|1314
6S0X|1|a|G|1315
6S0X|1|a|A|1316
6S0X|1|a|U|1317
6S0X|1|a|U|1318
*
6S0X|1|a|A|1339
6S0X|1|a|U|1340
6S0X|1|a|G|1341
6S0X|1|a|A|1342
6S0X|1|a|A|1343
6S0X|1|a|G|1344

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain m

30S ribosomal protein S13