IL_6S0X_168

3D structure

PDB id

6S0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

GGAACUCGG*CUGUC

Length

14 nucleotides

Bulged bases

6S0X|1|A|G|2019

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S0X_168 not in the Motif Atlas

Homologous match to IL_4WF9_117

Geometric discrepancy: 0.0981

The information below is about IL_4WF9_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

6S0X|1|A|G|1710
6S0X|1|A|G|1711
6S0X|1|A|A|1712
6S0X|1|A|A|1713
6S0X|1|A|C|1714
6S0X|1|A|U|1715
6S0X|1|A|C|1716
6S0X|1|A|G|1717
6S0X|1|A|G|1718
*
6S0X|1|A|C|2017
6S0X|1|A|U|2018
6S0X|1|A|G|2019
6S0X|1|A|U|2020
6S0X|1|A|C|2021

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain I

50S ribosomal protein L14