IL_6S0X_176

3D structure

PDB id

6S0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

GAACAUAUG*CAUCUUGAC

Length

18 nucleotides

Bulged bases

6S0X|1|a|C|486

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S0X_176 not in the Motif Atlas

Homologous match to IL_6CZR_360

Geometric discrepancy: 0.5513

The information below is about IL_6CZR_360

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6S0X|1|a|G|458
6S0X|1|a|A|459
6S0X|1|a|A|460
6S0X|1|a|C|461
6S0X|1|a|A|462
6S0X|1|a|U|463
6S0X|1|a|A|464
6S0X|1|a|U|465
6S0X|1|a|G|466
*
6S0X|1|a|C|483
6S0X|1|a|A|484
6S0X|1|a|U|485
6S0X|1|a|C|486
6S0X|1|a|U|487
6S0X|1|a|U|488
6S0X|1|a|G|489
6S0X|1|a|A|490
6S0X|1|a|C|491

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16