IL_6S0Z_009

3D structure

PDB id

6S0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22) in complex with erythromycin.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

ACA*UGGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S0Z_009 not in the Motif Atlas

Geometric match to IL_6DME_002

Geometric discrepancy: 0.3291

The information below is about IL_6DME_002

Detailed Annotation

8-nt loop receptor

Broad Annotation

Loop-receptor motif

Motif group

IL_36516.3

Basepair signature

cWW-cWW-cSH-cWW-L

Number of instances in this motif group

7

Unit IDs

6S0Z|1|A|A|305
6S0Z|1|A|C|306
6S0Z|1|A|A|307
*
6S0Z|1|A|U|408
6S0Z|1|A|G|409
6S0Z|1|A|G|410
6S0Z|1|A|A|411
6S0Z|1|A|U|412

Current chains

Chain A

23S ribosomal RNA

Nearby chains