IL_6S0Z_040

3D structure

PDB id

6S0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22) in complex with erythromycin.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CGUUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

6S0Z|1|A|U|1249

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S0Z_040 not in the Motif Atlas

Homologous match to IL_7RQB_047

Geometric discrepancy: 0.1048

The information below is about IL_7RQB_047

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

28

Unit IDs

6S0Z|1|A|C|1246
6S0Z|1|A|G|1247
6S0Z|1|A|U|1248
6S0Z|1|A|U|1249
6S0Z|1|A|G|1250
6S0Z|1|A|A|1251
6S0Z|1|A|A|1252
6S0Z|1|A|G|1253
*
6S0Z|1|A|U|1272
6S0Z|1|A|G|1273
6S0Z|1|A|G|1274
6S0Z|1|A|A|1275
6S0Z|1|A|G|1276

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain O

50S ribosomal protein L20