IL_6S12_008

3D structure

PDB id

6S12 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUUAGUAG*CGAAAUG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S12_008 not in the Motif Atlas

Homologous match to IL_4WF9_009

Geometric discrepancy: 0.1553

The information below is about IL_4WF9_009

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.1

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

6S12|1|A|C|241
6S12|1|A|U|242
6S12|1|A|U|243
6S12|1|A|A|244
6S12|1|A|G|245
6S12|1|A|U|246
6S12|1|A|A|247
6S12|1|A|G|248
*
6S12|1|A|C|256
6S12|1|A|G|257
6S12|1|A|A|258
6S12|1|A|A|259
6S12|1|A|A|260
6S12|1|A|U|261
6S12|1|A|G|262

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L35

Chain J

50S ribosomal protein L15