IL_6S12_023

3D structure

PDB id

6S12 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCG*CAAUC

Length

8 nucleotides

Bulged bases

6S12|1|A|C|821, 6S12|1|A|A|833, 6S12|1|A|A|834, 6S12|1|A|U|835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S12_023 not in the Motif Atlas

Homologous match to IL_7RQB_023

Geometric discrepancy: 0.1413

The information below is about IL_7RQB_023

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_90991.6

Basepair signature

cWW-cWW

Number of instances in this motif group

7

Unit IDs

6S12|1|A|G|820
6S12|1|A|C|821
6S12|1|A|G|822
*
6S12|1|A|C|832
6S12|1|A|A|833
6S12|1|A|A|834
6S12|1|A|U|835
6S12|1|A|C|836

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain C

50S ribosomal protein L2

Chain Q

50S ribosomal protein L22