IL_6S12_035

3D structure

PDB id

6S12 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

6S12|1|A|A|1187

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S12_035 not in the Motif Atlas

Geometric match to IL_4WF9_039

Geometric discrepancy: 0.1626

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

6S12|1|A|U|1062
6S12|1|A|U|1063
6S12|1|A|A|1064
6S12|1|A|A|1065
6S12|1|A|G|1066
6S12|1|A|U|1067
6S12|1|A|G|1068
*
6S12|1|A|C|1184
6S12|1|A|U|1185
6S12|1|A|A|1186
6S12|1|A|A|1187
6S12|1|A|A|1188

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L13