IL_6S12_047

3D structure

PDB id

6S12 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUGAGUAG*UGAAAUC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S12_047 not in the Motif Atlas

Homologous match to IL_4WF9_048

Geometric discrepancy: 0.1037

The information below is about IL_4WF9_048

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.1

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

6S12|1|A|G|1300
6S12|1|A|U|1301
6S12|1|A|G|1302
6S12|1|A|A|1303
6S12|1|A|G|1304
6S12|1|A|U|1305
6S12|1|A|A|1306
6S12|1|A|G|1307
*
6S12|1|A|U|2038
6S12|1|A|G|2039
6S12|1|A|A|2040
6S12|1|A|A|2041
6S12|1|A|A|2042
6S12|1|A|U|2043
6S12|1|A|C|2044

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain Q

50S ribosomal protein L22

Chain Z

50S ribosomal protein L32