Loop IL_6S12

3D structure

PDB id: 6S12 (explore in PDB, NAKB, or RNA 3D Hub)
Description: Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22).
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å

Loop

Sequence: AUAGGCGAAGCGUGCGAUUGGAUUGCACGUC*GGGAGAAGACAUUGUGUCUUCGAGUCGUUGAUUU
Length: 65 nucleotides
Bulged bases: 6S12|1|A|U|1503, 6S12|1|A|G|1574, 6S12|1|A|A|1575, 6S12|1|A|G|1583, 6S12|1|A|U|1584
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6S12|1|A|A|1481
6S12|1|A|U|1482
6S12|1|A|A|1483
6S12|1|A|G|1484
6S12|1|A|G|1485
6S12|1|A|C|1486
6S12|1|A|G|1487
6S12|1|A|A|1488
6S12|1|A|A|1489
6S12|1|A|G|1490
6S12|1|A|C|1491
6S12|1|A|G|1492
6S12|1|A|U|1493
6S12|1|A|G|1494
6S12|1|A|C|1495
6S12|1|A|G|1496
6S12|1|A|A|1497
6S12|1|A|U|1498
6S12|1|A|U|1499
6S12|1|A|G|1500
6S12|1|A|G|1501
6S12|1|A|A|1502
6S12|1|A|U|1503
6S12|1|A|U|1504
6S12|1|A|G|1505
6S12|1|A|C|1506
6S12|1|A|A|1507
6S12|1|A|C|1508
6S12|1|A|G|1509
6S12|1|A|U|1510
6S12|1|A|C|1511
*
6S12|1|A|G|1570
6S12|1|A|G|1571
6S12|1|A|G|1572
6S12|1|A|A|1573
6S12|1|A|G|1574
6S12|1|A|A|1575
6S12|1|A|A|1576
6S12|1|A|G|1577
6S12|1|A|A|1578
6S12|1|A|C|1579
6S12|1|A|A|1580
6S12|1|A|U|1581
6S12|1|A|U|1582
6S12|1|A|G|1583
6S12|1|A|U|1584
6S12|1|A|G|1585
6S12|1|A|U|1586
6S12|1|A|C|1587
6S12|1|A|U|1588
6S12|1|A|U|1589
6S12|1|A|C|1590
6S12|1|A|G|1591
6S12|1|A|A|1592
6S12|1|A|G|1593
6S12|1|A|U|1594
6S12|1|A|C|1595
6S12|1|A|G|1596
6S12|1|A|U|1597
6S12|1|A|U|1598
6S12|1|A|G|1599
6S12|1|A|A|1600
6S12|1|A|U|1601
6S12|1|A|U|1602
6S12|1|A|U|1603

Current chains

Chain A: 23S ribosomal RNA

Nearby chains

Chain L: 50S ribosomal protein L17

IL_6S12_052