IL_6S12_059
3D structure
- PDB id
- 6S12 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GGAA*UC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6S12_059 not in the Motif Atlas
- Geometric match to IL_5TBW_076
- Geometric discrepancy: 0.1566
- The information below is about IL_5TBW_076
- Detailed Annotation
- Major groove platform; stack outside cWW
- Broad Annotation
- Major groove platform
- Motif group
- IL_50694.4
- Basepair signature
- cWW-cWW-tSH-cWW-R
- Number of instances in this motif group
- 28
Unit IDs
6S12|1|A|G|1710
6S12|1|A|G|1711
6S12|1|A|A|1712
6S12|1|A|A|1713
*
6S12|1|A|U|2020
6S12|1|A|C|2021
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain D
- 50S ribosomal protein L3
- Chain I
- 50S ribosomal protein L14
Coloring options: