3D structure

PDB id
6S12 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22).
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GGAA*UC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6S12_059 not in the Motif Atlas
Geometric match to IL_5TBW_076
Geometric discrepancy: 0.1566
The information below is about IL_5TBW_076
Detailed Annotation
Major groove platform; stack outside cWW
Broad Annotation
Major groove platform
Motif group
IL_50694.4
Basepair signature
cWW-cWW-tSH-cWW-R
Number of instances in this motif group
28

Unit IDs

6S12|1|A|G|1710
6S12|1|A|G|1711
6S12|1|A|A|1712
6S12|1|A|A|1713
*
6S12|1|A|U|2020
6S12|1|A|C|2021

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain D
50S ribosomal protein L3
Chain I
50S ribosomal protein L14

Coloring options:


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