IL_6S12_060

3D structure

PDB id

6S12 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

ACUCGG*CUGU

Length

10 nucleotides

Bulged bases

6S12|1|A|G|2019

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S12_060 not in the Motif Atlas

Homologous match to IL_5J7L_307

Geometric discrepancy: 0.1747

The information below is about IL_5J7L_307

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_76758.2

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

6S12|1|A|A|1713
6S12|1|A|C|1714
6S12|1|A|U|1715
6S12|1|A|C|1716
6S12|1|A|G|1717
6S12|1|A|G|1718
*
6S12|1|A|C|2017
6S12|1|A|U|2018
6S12|1|A|G|2019
6S12|1|A|U|2020

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain I

50S ribosomal protein L14