IL_6S12_061

3D structure

PDB id

6S12 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

6S12|1|A|G|1743

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S12_061 not in the Motif Atlas

Homologous match to IL_5J7L_308

Geometric discrepancy: 0.1545

The information below is about IL_5J7L_308

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

6S12|1|A|C|1730
6S12|1|A|G|1731
6S12|1|A|U|1732
6S12|1|A|A|1733
6S12|1|A|A|1734
6S12|1|A|C|1735
*
6S12|1|A|G|1740
6S12|1|A|G|1741
6S12|1|A|A|1742
6S12|1|A|G|1743
6S12|1|A|A|1744
6S12|1|A|A|1745
6S12|1|A|G|1746

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2