IL_6S12_064

3D structure

PDB id

6S12 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGCUAAA*UGAUGUAUA

Length

16 nucleotides

Bulged bases

6S12|1|A|U|1828, 6S12|1|A|U|1843, 6S12|1|A|U|1847

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S12_064 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.1454

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

6S12|1|A|U|1825
6S12|1|A|G|1826
6S12|1|A|C|1827
6S12|1|A|U|1828
6S12|1|A|A|1829
6S12|1|A|A|1830
6S12|1|A|A|1831
*
6S12|1|A|U|1840
6S12|1|A|G|1841
6S12|1|A|A|1842
6S12|1|A|U|1843
6S12|1|A|G|1844
6S12|1|A|U|1845
6S12|1|A|A|1846
6S12|1|A|U|1847
6S12|1|A|A|1848

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2