IL_6S12_069

3D structure

PDB id

6S12 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGGAG*CGAAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S12_069 not in the Motif Atlas

Homologous match to IL_4WF9_074

Geometric discrepancy: 0.4263

The information below is about IL_4WF9_074

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_66798.2

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6S12|1|A|A|1883
6S12|1|A|G|1884
6S12|1|A|G|1885
6S12|1|A|A|1886
6S12|1|A|G|1887
*
6S12|1|A|C|1909
6S12|1|A|G|1910
6S12|1|A|A|1911
6S12|1|A|A|1912
6S12|1|A|U|1913

Current chains

Chain A

23S ribosomal RNA

Nearby chains