IL_6S12_088

3D structure

PDB id

6S12 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S12_088 not in the Motif Atlas

Homologous match to IL_4WF9_093

Geometric discrepancy: 0.434

The information below is about IL_4WF9_093

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6S12|1|A|C|2493
6S12|1|A|C|2494
6S12|1|A|A|2495
6S12|1|A|A|2496
6S12|1|A|G|2497
*
6S12|1|A|C|2507
6S12|1|A|G|2508
6S12|1|A|A|2509
6S12|1|A|C|2510
6S12|1|A|G|2511

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain K

50S ribosomal protein L16