IL_6S12_111

3D structure

PDB id

6S12 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

ACUCUACGGAGUUACAAAGGACGACAU*AUGUUGUCUCUCUUGAGU

Length

45 nucleotides

Bulged bases

6S12|1|A|G|319, 6S12|1|A|G|327, 6S12|1|A|C|333, 6S12|1|A|U|394, 6S12|1|A|U|399, 6S12|1|A|U|403, 6S12|1|A|U|404

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6S12|1|A|A|307
6S12|1|A|C|308
6S12|1|A|U|309
6S12|1|A|C|310
6S12|1|A|U|311
6S12|1|A|A|312
6S12|1|A|C|315
6S12|1|A|G|316
6S12|1|A|G|317
6S12|1|A|A|318
6S12|1|A|G|319
6S12|1|A|U|320
6S12|1|A|U|321
6S12|1|A|A|322
6S12|1|A|C|323
6S12|1|A|A|324
6S12|1|A|A|325
6S12|1|A|A|326
6S12|1|A|G|327
6S12|1|A|G|328
6S12|1|A|A|329
6S12|1|A|C|330
6S12|1|A|G|331
6S12|1|A|A|332
6S12|1|A|C|333
6S12|1|A|A|334
6S12|1|A|U|335
*
6S12|1|A|A|391
6S12|1|A|U|392
6S12|1|A|G|393
6S12|1|A|U|394
6S12|1|A|U|395
6S12|1|A|G|396
6S12|1|A|U|397
6S12|1|A|C|398
6S12|1|A|U|399
6S12|1|A|C|400
6S12|1|A|U|401
6S12|1|A|C|402
6S12|1|A|U|403
6S12|1|A|U|404
6S12|1|A|G|405
6S12|1|A|A|406
6S12|1|A|G|407
6S12|1|A|U|408

Current chains

Chain A

23S ribosomal RNA

Nearby chains