IL_6S12_115

3D structure

PDB id

6S12 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGGAUG*CAUUUAAAGAGUGCGUAAUAGCUCACU

Length

33 nucleotides

Bulged bases

6S12|1|A|U|1127, 6S12|1|A|G|1133, 6S12|1|A|U|1138, 6S12|1|A|A|1139

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6S12|1|A|A|1098
6S12|1|A|G|1099
6S12|1|A|G|1100
6S12|1|A|A|1101
6S12|1|A|U|1102
6S12|1|A|G|1103
*
6S12|1|A|C|1123
6S12|1|A|A|1124
6S12|1|A|U|1125
6S12|1|A|U|1126
6S12|1|A|U|1127
6S12|1|A|A|1128
6S12|1|A|A|1129
6S12|1|A|A|1130
6S12|1|A|G|1131
6S12|1|A|A|1132
6S12|1|A|G|1133
6S12|1|A|U|1134
6S12|1|A|G|1135
6S12|1|A|C|1136
6S12|1|A|G|1137
6S12|1|A|U|1138
6S12|1|A|A|1139
6S12|1|A|A|1140
6S12|1|A|U|1141
6S12|1|A|A|1142
6S12|1|A|G|1143
6S12|1|A|C|1144
6S12|1|A|U|1145
6S12|1|A|C|1146
6S12|1|A|A|1147
6S12|1|A|C|1148
6S12|1|A|U|1149

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain G

50S ribosomal protein L6