IL_6S12_117

3D structure

PDB id

6S12 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UAGGAUAGGCGAAGCGUGCGAUUGGAUUGCACGUC*GGGAGAAGACAUUGUGUCUUCGAGUCGUUGAUUUCACA

Length

73 nucleotides

Bulged bases

6S12|1|A|A|1497, 6S12|1|A|U|1503, 6S12|1|A|G|1574, 6S12|1|A|A|1580, 6S12|1|A|U|1582, 6S12|1|A|G|1583, 6S12|1|A|U|1584, 6S12|1|A|C|1606

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6S12|1|A|U|1477
6S12|1|A|A|1478
6S12|1|A|G|1479
6S12|1|A|G|1480
6S12|1|A|A|1481
6S12|1|A|U|1482
6S12|1|A|A|1483
6S12|1|A|G|1484
6S12|1|A|G|1485
6S12|1|A|C|1486
6S12|1|A|G|1487
6S12|1|A|A|1488
6S12|1|A|A|1489
6S12|1|A|G|1490
6S12|1|A|C|1491
6S12|1|A|G|1492
6S12|1|A|U|1493
6S12|1|A|G|1494
6S12|1|A|C|1495
6S12|1|A|G|1496
6S12|1|A|A|1497
6S12|1|A|U|1498
6S12|1|A|U|1499
6S12|1|A|G|1500
6S12|1|A|G|1501
6S12|1|A|A|1502
6S12|1|A|U|1503
6S12|1|A|U|1504
6S12|1|A|G|1505
6S12|1|A|C|1506
6S12|1|A|A|1507
6S12|1|A|C|1508
6S12|1|A|G|1509
6S12|1|A|U|1510
6S12|1|A|C|1511
*
6S12|1|A|G|1570
6S12|1|A|G|1571
6S12|1|A|G|1572
6S12|1|A|A|1573
6S12|1|A|G|1574
6S12|1|A|A|1575
6S12|1|A|A|1576
6S12|1|A|G|1577
6S12|1|A|A|1578
6S12|1|A|C|1579
6S12|1|A|A|1580
6S12|1|A|U|1581
6S12|1|A|U|1582
6S12|1|A|G|1583
6S12|1|A|U|1584
6S12|1|A|G|1585
6S12|1|A|U|1586
6S12|1|A|C|1587
6S12|1|A|U|1588
6S12|1|A|U|1589
6S12|1|A|C|1590
6S12|1|A|G|1591
6S12|1|A|A|1592
6S12|1|A|G|1593
6S12|1|A|U|1594
6S12|1|A|C|1595
6S12|1|A|G|1596
6S12|1|A|U|1597
6S12|1|A|U|1598
6S12|1|A|G|1599
6S12|1|A|A|1600
6S12|1|A|U|1601
6S12|1|A|U|1602
6S12|1|A|U|1603
6S12|1|A|C|1604
6S12|1|A|A|1605
6S12|1|A|C|1606
6S12|1|A|A|1607

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L17