IL_6S12_128

3D structure

PDB id

6S12 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S12_128 not in the Motif Atlas

Homologous match to IL_9DFE_102

Geometric discrepancy: 0.3647

The information below is about IL_9DFE_102

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6S12|1|A|U|2679
6S12|1|A|U|2680
6S12|1|A|A|2681
6S12|1|A|G|2682
6S12|1|A|U|2683
6S12|1|A|A|2684
6S12|1|A|C|2685
*
6S12|1|A|G|2690
6S12|1|A|G|2691
6S12|1|A|A|2692
6S12|1|A|C|2693
6S12|1|A|C|2694
6S12|1|A|G|2695

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L6