IL_6S13_011

3D structure

PDB id

6S13 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.58 Å

Loop

Sequence

AGAG*UGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S13_011 not in the Motif Atlas

Homologous match to IL_5J7L_256

Geometric discrepancy: 0.1449

The information below is about IL_5J7L_256

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

6S13|1|A|A|581
6S13|1|A|G|582
6S13|1|A|A|583
6S13|1|A|G|584
*
6S13|1|A|U|597
6S13|1|A|G|598
6S13|1|A|A|599
6S13|1|A|U|600

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L13

Chain O

50S ribosomal protein L20