3D structure

PDB id
6S13 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22).
Experimental method
ELECTRON MICROSCOPY
Resolution
3.58 Å

Loop

Sequence
GCG*CAAUC
Length
8 nucleotides
Bulged bases
6S13|1|A|C|821, 6S13|1|A|A|833, 6S13|1|A|A|834, 6S13|1|A|U|835
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6S13_022 not in the Motif Atlas
Geometric match to IL_4V9F_030
Geometric discrepancy: 0.111
The information below is about IL_4V9F_030
Detailed Annotation
Multiple bulged bases
Broad Annotation
No text annotation
Motif group
IL_57881.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
1

Unit IDs

6S13|1|A|G|820
6S13|1|A|C|821
6S13|1|A|G|822
*
6S13|1|A|C|832
6S13|1|A|A|833
6S13|1|A|A|834
6S13|1|A|U|835
6S13|1|A|C|836

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain 2
50S ribosomal protein L34
Chain C
50S ribosomal protein L2
Chain Q
50S ribosomal protein L22

Coloring options:


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