IL_6S13_022
3D structure
- PDB id
- 6S13 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.58 Å
Loop
- Sequence
- GCG*CAAUC
- Length
- 8 nucleotides
- Bulged bases
- 6S13|1|A|C|821, 6S13|1|A|A|833, 6S13|1|A|A|834, 6S13|1|A|U|835
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6S13_022 not in the Motif Atlas
- Geometric match to IL_4V9F_030
- Geometric discrepancy: 0.111
- The information below is about IL_4V9F_030
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_57881.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
6S13|1|A|G|820
6S13|1|A|C|821
6S13|1|A|G|822
*
6S13|1|A|C|832
6S13|1|A|A|833
6S13|1|A|A|834
6S13|1|A|U|835
6S13|1|A|C|836
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 2
- 50S ribosomal protein L34
- Chain C
- 50S ribosomal protein L2
- Chain Q
- 50S ribosomal protein L22
Coloring options: