3D structure

PDB id
6S13 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22).
Experimental method
ELECTRON MICROSCOPY
Resolution
3.58 Å

Loop

Sequence
GAGGUAG*CGAAUGC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6S13_026 not in the Motif Atlas
Homologous match to IL_4WF9_031
Geometric discrepancy: 0.1236
The information below is about IL_4WF9_031
Detailed Annotation
7x7 Sarcin-Ricin with intercalated A; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_29198.2
Basepair signature
cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
Number of instances in this motif group
4

Unit IDs

6S13|1|A|G|901
6S13|1|A|A|902
6S13|1|A|G|903
6S13|1|A|G|904
6S13|1|A|U|905
6S13|1|A|A|906
6S13|1|A|G|907
*
6S13|1|A|C|960
6S13|1|A|G|961
6S13|1|A|A|962
6S13|1|A|A|963
6S13|1|A|U|964
6S13|1|A|G|965
6S13|1|A|C|966

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain B
5S ribosomal RNA; 5S rRNA
Chain K
50S ribosomal protein L16
Chain U
50S ribosomal protein L27
Chain X
50S ribosomal protein L30

Coloring options:


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