IL_6S13_041

3D structure

PDB id

6S13 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.58 Å

Loop

Sequence

GA*UUUAAAGAGUGCGUAAUAGCUCAC

Length

26 nucleotides

Bulged bases

6S13|1|A|U|1127, 6S13|1|A|A|1132, 6S13|1|A|G|1133, 6S13|1|A|U|1138, 6S13|1|A|A|1139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6S13|1|A|G|1100
6S13|1|A|A|1101
*
6S13|1|A|U|1125
6S13|1|A|U|1126
6S13|1|A|U|1127
6S13|1|A|A|1128
6S13|1|A|A|1129
6S13|1|A|A|1130
6S13|1|A|G|1131
6S13|1|A|A|1132
6S13|1|A|G|1133
6S13|1|A|U|1134
6S13|1|A|G|1135
6S13|1|A|C|1136
6S13|1|A|G|1137
6S13|1|A|U|1138
6S13|1|A|A|1139
6S13|1|A|A|1140
6S13|1|A|U|1141
6S13|1|A|A|1142
6S13|1|A|G|1143
6S13|1|A|C|1144
6S13|1|A|U|1145
6S13|1|A|C|1146
6S13|1|A|A|1147
6S13|1|A|C|1148

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain G

50S ribosomal protein L6