IL_6S13_048

3D structure

PDB id

6S13 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.58 Å

Loop

Sequence

GUGAGUAG*UGAAAUC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S13_048 not in the Motif Atlas

Homologous match to IL_4WF9_048

Geometric discrepancy: 0.1222

The information below is about IL_4WF9_048

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

6S13|1|A|G|1300
6S13|1|A|U|1301
6S13|1|A|G|1302
6S13|1|A|A|1303
6S13|1|A|G|1304
6S13|1|A|U|1305
6S13|1|A|A|1306
6S13|1|A|G|1307
*
6S13|1|A|U|2038
6S13|1|A|G|2039
6S13|1|A|A|2040
6S13|1|A|A|2041
6S13|1|A|A|2042
6S13|1|A|U|2043
6S13|1|A|C|2044

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain Q

50S ribosomal protein L22

Chain Z

50S ribosomal protein L32