3D structure

PDB id
6S13 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22).
Experimental method
ELECTRON MICROSCOPY
Resolution
3.58 Å

Loop

Sequence
CU*GGG
Length
5 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6S13_150 not in the Motif Atlas
Geometric match to IL_5TBW_070
Geometric discrepancy: 0.314
The information below is about IL_5TBW_070
Detailed Annotation
Single stack bend
Broad Annotation
Single stack bend
Motif group
IL_05035.2
Basepair signature
cWW-L-cWW
Number of instances in this motif group
38

Unit IDs

6S13|1|a|C|1125
6S13|1|a|U|1126
*
6S13|1|a|G|1195
6S13|1|a|G|1196
6S13|1|a|G|1197

Current chains

Chain a
16S ribosomal RNA

Nearby chains

Chain c
30S ribosomal protein S3
Chain i
30S ribosomal protein S9
Chain j
30S ribosomal protein S10
Chain n
30S ribosomal protein S14 type Z

Coloring options:


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