IL_6S13_182

3D structure

PDB id

6S13 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.58 Å

Loop

Sequence

GAACAUAUGUGU*GCACAUCUUGAC

Length

24 nucleotides

Bulged bases

6S13|1|a|A|462, 6S13|1|a|C|486

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6S13|1|a|G|458
6S13|1|a|A|459
6S13|1|a|A|460
6S13|1|a|C|461
6S13|1|a|A|462
6S13|1|a|U|463
6S13|1|a|A|464
6S13|1|a|U|465
6S13|1|a|G|466
6S13|1|a|U|467
6S13|1|a|G|468
6S13|1|a|U|469
*
6S13|1|a|G|480
6S13|1|a|C|481
6S13|1|a|A|482
6S13|1|a|C|483
6S13|1|a|A|484
6S13|1|a|U|485
6S13|1|a|C|486
6S13|1|a|U|487
6S13|1|a|U|488
6S13|1|a|G|489
6S13|1|a|A|490
6S13|1|a|C|491

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16