IL_6S13_195

3D structure

PDB id

6S13 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.58 Å

Loop

Sequence

GCACAGCUUGUACAGGAUAGGUAG*CUACCCUAGCUGUGU

Length

39 nucleotides

Bulged bases

6S13|1|A|A|2132, 6S13|1|A|U|2138, 6S13|1|A|C|2140, 6S13|1|A|A|2141, 6S13|1|A|G|2142, 6S13|1|A|U|2145

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6S13|1|A|G|2128
6S13|1|A|C|2129
6S13|1|A|A|2130
6S13|1|A|C|2131
6S13|1|A|A|2132
6S13|1|A|G|2133
6S13|1|A|C|2134
6S13|1|A|U|2135
6S13|1|A|U|2136
6S13|1|A|G|2137
6S13|1|A|U|2138
6S13|1|A|A|2139
6S13|1|A|C|2140
6S13|1|A|A|2141
6S13|1|A|G|2142
6S13|1|A|G|2143
6S13|1|A|A|2144
6S13|1|A|U|2145
6S13|1|A|A|2146
6S13|1|A|G|2147
6S13|1|A|G|2148
6S13|1|A|U|2149
6S13|1|A|A|2150
6S13|1|A|G|2151
*
6S13|1|A|C|2201
6S13|1|A|U|2202
6S13|1|A|A|2203
6S13|1|A|C|2204
6S13|1|A|C|2205
6S13|1|A|C|2206
6S13|1|A|U|2207
6S13|1|A|A|2208
6S13|1|A|G|2209
6S13|1|A|C|2210
6S13|1|A|U|2211
6S13|1|A|G|2212
6S13|1|A|U|2213
6S13|1|A|G|2214
6S13|1|A|U|2215

Current chains

Chain A

23S ribosomal RNA

Nearby chains