IL_6S47_006
3D structure
- PDB id
- 6S47 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- CUUAGUAA*UGAAGCG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6S47_006 not in the Motif Atlas
- Homologous match to IL_8C3A_006
- Geometric discrepancy: 0.0686
- The information below is about IL_8C3A_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_88613.1
- Basepair signature
- cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
6S47|1|AA|C|82
6S47|1|AA|U|83
6S47|1|AA|U|84
6S47|1|AA|A|85
6S47|1|AA|G|86
6S47|1|AA|U|87
6S47|1|AA|A|88
6S47|1|AA|A|89
*
6S47|1|AA|U|97
6S47|1|AA|G|98
6S47|1|AA|A|99
6S47|1|AA|A|100
6S47|1|AA|G|101
6S47|1|AA|C|102
6S47|1|AA|G|103
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain AF
- 60S ribosomal protein L4-A
- Chain AN
- 60S ribosomal protein L13-A
- Chain AP
- 60S ribosomal protein L15-A
- Chain AS
- 60S ribosomal protein L18-A
- Chain Ac
- 60S ribosomal protein L28
Coloring options: