IL_6S47_023

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GGGG*UGCAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S47_023 not in the Motif Atlas

Homologous match to IL_8C3A_025

Geometric discrepancy: 0.087

The information below is about IL_8C3A_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07235.3

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

6S47|1|AA|G|725
6S47|1|AA|G|726
6S47|1|AA|G|727
6S47|1|AA|G|728
*
6S47|1|AA|U|741
6S47|1|AA|G|742
6S47|1|AA|C|743
6S47|1|AA|A|744
6S47|1|AA|C|745

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AS

60S ribosomal protein L18-A

Chain Ad

60S ribosomal protein L29