IL_6S47_030

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S47_030 not in the Motif Atlas

Homologous match to IL_8C3A_033

Geometric discrepancy: 0.0791

The information below is about IL_8C3A_033

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

6S47|1|AA|U|834
6S47|1|AA|G|835
6S47|1|AA|A|836
6S47|1|AA|A|837
6S47|1|AA|G|838
*
6S47|1|AA|U|855
6S47|1|AA|G|856
6S47|1|AA|G|857
6S47|1|AA|A|858
6S47|1|AA|G|859

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AD

60S ribosomal protein L2-A

Chain AT

60S ribosomal protein L19-A

Chain Ar

60S ribosomal protein L43-A