3D structure

PDB id
6S47 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1
Experimental method
ELECTRON MICROSCOPY
Resolution
3.28 Å

Loop

Sequence
GAUA*UGC
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6S47_063 not in the Motif Atlas
Homologous match to IL_8C3A_070
Geometric discrepancy: 0.1333
The information below is about IL_8C3A_070
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_15698.1
Basepair signature
cWW-tSH-cSH-cWW
Number of instances in this motif group
9

Unit IDs

6S47|1|AA|G|1618
6S47|1|AA|A|1619
6S47|1|AA|U|1620
6S47|1|AA|A|1621
*
6S47|1|AA|U|1824
6S47|1|AA|G|1825
6S47|1|AA|C|1826

Current chains

Chain AA
28S ribosomal RNA

Nearby chains

Chain AC
5.8S ribosomal RNA; 5.8S rRNA
Chain Am
60S ribosomal protein L38

Coloring options:


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