IL_6S47_064

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GGA*UUUUC

Length

8 nucleotides

Bulged bases

6S47|1|AA|U|1821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S47_064 not in the Motif Atlas

Geometric match to IL_4OQU_001

Geometric discrepancy: 0.3694

The information below is about IL_4OQU_001

Detailed Annotation

Major groove platform with extra pair

Broad Annotation

Major groove platform

Motif group

IL_15698.3

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

10

Unit IDs

6S47|1|AA|G|1623
6S47|1|AA|G|1624
6S47|1|AA|A|1625
*
6S47|1|AA|U|1818
6S47|1|AA|U|1819
6S47|1|AA|U|1820
6S47|1|AA|U|1821
6S47|1|AA|C|1822

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain Ai

60S ribosomal protein L34-A