3D structure

PDB id
6S47 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1
Experimental method
ELECTRON MICROSCOPY
Resolution
3.28 Å

Loop

Sequence
CGUAAC*GGAUAAG
Length
13 nucleotides
Bulged bases
6S47|1|AA|U|1931
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6S47_077 not in the Motif Atlas
Geometric match to IL_4V9F_063
Geometric discrepancy: 0.0963
The information below is about IL_4V9F_063
Detailed Annotation
tSH-tSH-tHH-tHS
Broad Annotation
No text annotation
Motif group
IL_47346.2
Basepair signature
cWW-tSH-L-R-tHH-tHS-cWW
Number of instances in this motif group
7

Unit IDs

6S47|1|AA|C|1918
6S47|1|AA|G|1919
6S47|1|AA|U|1920
6S47|1|AA|A|1921
6S47|1|AA|A|1922
6S47|1|AA|C|1923
*
6S47|1|AA|G|1928
6S47|1|AA|G|1929
6S47|1|AA|A|1930
6S47|1|AA|U|1931
6S47|1|AA|A|1932
6S47|1|AA|A|1933
6S47|1|AA|G|1934

Current chains

Chain AA
28S ribosomal RNA

Nearby chains

Chain AT
60S ribosomal protein L19-A
Chain Ap
60S ribosomal protein L41-B
Chain Ar
60S ribosomal protein L43-A
Chain BA
Small subunit ribosomal RNA; SSU rRNA

Coloring options:


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