IL_6S47_082

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CGAUGG*UGUUGACG

Length

14 nucleotides

Bulged bases

6S47|1|AA|U|2159, 6S47|1|AA|U|2175, 6S47|1|AA|C|2179

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S47_082 not in the Motif Atlas

Homologous match to IL_5TBW_083

Geometric discrepancy: 0.0726

The information below is about IL_5TBW_083

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_64509.1

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

2

Unit IDs

6S47|1|AA|C|2156
6S47|1|AA|G|2157
6S47|1|AA|A|2158
6S47|1|AA|U|2159
6S47|1|AA|G|2160
6S47|1|AA|G|2161
*
6S47|1|AA|U|2173
6S47|1|AA|G|2174
6S47|1|AA|U|2175
6S47|1|AA|U|2176
6S47|1|AA|G|2177
6S47|1|AA|A|2178
6S47|1|AA|C|2179
6S47|1|AA|G|2180

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AD

60S ribosomal protein L2-A

Chain Ar

60S ribosomal protein L43-A

Chain BA

Small subunit ribosomal RNA; SSU rRNA