IL_6S47_086
3D structure
- PDB id
- 6S47 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- GAAUG*CGC
- Length
- 8 nucleotides
- Bulged bases
- 6S47|1|AA|U|2209
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6S47_086 not in the Motif Atlas
- Homologous match to IL_5TBW_087
- Geometric discrepancy: 0.1383
- The information below is about IL_5TBW_087
- Detailed Annotation
- Major groove platform with extra pair
- Broad Annotation
- Major groove platform
- Motif group
- IL_63450.5
- Basepair signature
- cWW-cHS-cWW-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
6S47|1|AA|G|2206
6S47|1|AA|A|2207
6S47|1|AA|A|2208
6S47|1|AA|U|2209
6S47|1|AA|G|2210
*
6S47|1|AA|C|2235
6S47|1|AA|G|2236
6S47|1|AA|C|2237
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain BA
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: