IL_6S47_103

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

6S47|1|AA|U|2860

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S47_103 not in the Motif Atlas

Geometric match to IL_5TBW_105

Geometric discrepancy: 0.0974

The information below is about IL_5TBW_105

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

6S47|1|AA|G|2828
6S47|1|AA|U|2829
6S47|1|AA|G|2830
*
6S47|1|AA|U|2858
6S47|1|AA|U|2859
6S47|1|AA|U|2860
6S47|1|AA|U|2861
6S47|1|AA|U|2862

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AE

60S ribosomal protein L3

Chain AL

60S ribosomal protein L10