IL_6S47_106

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

6S47|1|AA|G|2945, 6S47|1|AA|A|2946

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S47_106 not in the Motif Atlas

Homologous match to IL_8C3A_116

Geometric discrepancy: 0.0466

The information below is about IL_8C3A_116

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

6S47|1|AA|C|2879
6S47|1|AA|U|2880
6S47|1|AA|C|2881
*
6S47|1|AA|G|2943
6S47|1|AA|U|2944
6S47|1|AA|G|2945
6S47|1|AA|A|2946
6S47|1|AA|G|2947

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AE

60S ribosomal protein L3

Chain AX

60S ribosomal protein L23-A