IL_6S47_116

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

UUUUUG*CGAAG

Length

11 nucleotides

Bulged bases

6S47|1|AA|U|3056, 6S47|1|AA|U|3058

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S47_116 not in the Motif Atlas

Homologous match to IL_5TBW_118

Geometric discrepancy: 0.0814

The information below is about IL_5TBW_118

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

6S47|1|AA|U|3054
6S47|1|AA|U|3055
6S47|1|AA|U|3056
6S47|1|AA|U|3057
6S47|1|AA|U|3058
6S47|1|AA|G|3059
*
6S47|1|AA|C|3084
6S47|1|AA|G|3085
6S47|1|AA|A|3086
6S47|1|AA|A|3087
6S47|1|AA|G|3088

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AE

60S ribosomal protein L3

Chain AY

60S ribosomal protein L24-A

Chain Af

60S ribosomal protein L31-A