IL_6S47_119

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CACAC*GCGUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S47_119 not in the Motif Atlas

Homologous match to IL_5TBW_121

Geometric discrepancy: 0.2043

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

6S47|1|AA|C|3162
6S47|1|AA|A|3163
6S47|1|AA|C|3164
6S47|1|AA|A|3165
6S47|1|AA|C|3166
*
6S47|1|AA|G|3284
6S47|1|AA|C|3285
6S47|1|AA|G|3286
6S47|1|AA|U|3287
6S47|1|AA|G|3288

Current chains

Chain AA

28S ribosomal RNA

Nearby chains