IL_6S47_133

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

AGAG*CGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S47_133 not in the Motif Atlas

Homologous match to IL_8C3A_141

Geometric discrepancy: 0.1281

The information below is about IL_8C3A_141

Detailed Annotation

Double sheared; A in syn

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

6S47|1|AA|A|3342
6S47|1|AA|G|3343
6S47|1|AA|A|3344
6S47|1|AA|G|3345
*
6S47|1|AA|C|3360
6S47|1|AA|G|3361
6S47|1|AA|A|3362
6S47|1|AA|U|3363

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AT

60S ribosomal protein L19-A

Chain AY

60S ribosomal protein L24-A

Chain BJ

40S ribosomal protein S8-A