IL_6S47_134

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CC*GUUG

Length

6 nucleotides

Bulged bases

6S47|1|AA|U|3354, 6S47|1|AA|U|3355

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S47_134 not in the Motif Atlas

Homologous match to IL_8C3A_142

Geometric discrepancy: 0.3702

The information below is about IL_8C3A_142

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

6S47|1|AA|C|3349
6S47|1|AA|C|3350
*
6S47|1|AA|G|3353
6S47|1|AA|U|3354
6S47|1|AA|U|3355
6S47|1|AA|G|3356

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AW

60S ribosomal protein L22-A

Chain BJ

40S ribosomal protein S8-A